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Fluctuations of the transcription factor ATML1 generate the pattern of giant...
These files are the primary time lapse imaging data for the paper: Heather M. Meyer, Jose Teles, Pau Formosa-Jordan, Yassin Refahi, Rita San-Bento, Gwyneth Ingram, Henrik... -
McConnell_Coverage_2022
In our manuscript "Immune gene variation associated with chromosome-scale differences among individual zebrafish genomes" we describe immune gene variation among individual... -
MartinezMeyer_et_al_DivDist_2021
Species distribution model input layers for Mexican Wolf (Canis lupus baileyi), in support of publication by Martinez-Meyer et al. (2021) Diversity and Distributions.... -
MaizeCode_annotation_evidence_data_2017
Here we provide a standardized evidence datasets for doing MAKER-P annotation on maize genomes. The data was collected from public repositories like genbank, gramene and... -
ReADI Smartphone Health and Activity
The Reliable Analytics for Disease Indicators (ReADI) studies were conducted as part of the program, funded by Defense Advanced Research Projects Agency (DARPA). The study aimed... -
The interplay of demography and selection during maize domestication and expansion
This folder stores intermediate files and scripts for calculating burden of deleterious alleles in maize and teosinte populations. -
Maize Syn10 Binmap markers with traits
In order to safeguard feeding the growing human population, it is important to understand and exploit the genetic basis of quantitative traits. Next-generation sequencing... -
Maize Diversity Phenotype Map
This directory includes image data collected from 155 maize plants over 32 days representing 32 maize inbreds which were also grown across the USA for field phenotyping as part... -
San Joaquin Basin Model - Grace Match
ParFlow-CLM Model of the San Joaquin River Basin. This iteration of the model includes groundwater pumping and irrigation inputs. All datasets (except NLDAS forcing data) are... -
deprecated_Dysregulation of expression correlates with rare-allele burden...
Data in this directory is associated with Kremling et al., 2018, Nature. The data types in this directory tree are the matrix of gene expression counts of an average of 255... -
Dysregulation of expression correlates with rare-allele burden and fitness...
The data under this DOI include gene expression counts from a diversity panel of maize collected from 7 tissues (Goodman-Buckler Diversity panel or '282 panel'). Also contained... -
Stomatal Microtubule Detection Dataset
The dataset is utilized for the application of methods detailed in the paper titled "Segmenting Tubular Structures in Biological Images via Geometry-Aware Stretching Active... -
EquCab3 intermediate assemblies
This repository contains intermediate assemblies created in the process of producing EquCab3, an updated reference genome for the domestic horse. It includes a PacBio only... -
JZhang_LCondon_CONUS_Topography_Sep2020
This is a national topographic dataset that can support physically based hydrologic simulations at 1km and 250m spatial resolution over contiguous United States. A R package... -
Yang et al., 2017 Data for PVP deleterious alleles
Data described here is associated with the Yang et al., 2017, PLOS Genetics. The data types in this directory tree are: GERP annotation data, bam and SNP data, and ReadMe text... -
Genotype and phenotype for 962 biomass sorghum accessions
DNA of each accessions was digested with ApekI. Bar-coded DNA of 96 accessions was pooled and sequenced with a Genome Analyzer II. The short reads were aligned to BTx623... -
Plant CT
computed tomography dataset of soy, tomato, and wheat plants in weeks 2 through 5 of growth under high and low water conditions -
Phenotype and genotype data from Chibas sorghum breeding program
Phenotype and genotype data for the breeding program founders and training population from the Chibas sorghum breeding program based in Port-au-Prince Haiti. Repository contains... -
Predicting protein temperature sensitivity across the prokaryote-eukaryote divide
Protein thermostability is important for fitness, but it is difficult to measure stability for every protein in the proteome. Fortunately, protein thermostability is correlated... -
Protein stability profiles reflect plant species' evolutionary history
Protein thermostability predictions for Arabidopsis, maize, and poplar created using prokaryote protein optimal temperatures to estimate site-specific temperature sensitivity....