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Effects of transcriptional noise on estimates of gene and transcript...
RNA sequencing is widely used to measure gene expression across a vast range of animal and plant tissues and conditions. Most studies of computational methods for gene... -
Chromosome-scale genome assembly and population genomic analysis provide...
The genome assembly of Ia453-sh2 (Zm-Ia453-REFERENCE-FL-1.0.fa) have been deposited in NCBI database under BioProject number PRJNA646414, BioSample number SAMN15543012 and... -
Oryza officinalis complex gene and repeat annotations
Gene and repeat annotations for Oryza officinalis, Oryza eichingeri and Oryza rhizomatis -
Inbreeding Drives Maize Centromere Evolution
High-resolution image files that display 20Mb in 1kb windows showing presence, absence and SNPs for 45 maize inbreds over all 10 centromere-proximal regions, based on unique... -
Ramstein_SNPConstraintPrediction_2022
Supporting data for "Prediction of evolutionary constraint by genomic annotations improves prioritization of causal variants in maize"... -
Maize Syn10 Binmap markers with traits
In order to safeguard feeding the growing human population, it is important to understand and exploit the genetic basis of quantitative traits. Next-generation sequencing... -
Maize Diversity Phenotype Map
This directory includes image data collected from 155 maize plants over 32 days representing 32 maize inbreds which were also grown across the USA for field phenotyping as part... -
EquCab3 intermediate assemblies
This repository contains intermediate assemblies created in the process of producing EquCab3, an updated reference genome for the domestic horse. It includes a PacBio only... -
Comparative analysis of reference transcriptome atlas and insight into...
This folder contains generated data from a RNA-seq based study of a chia (Salvia hispanica) panel of 13 tissue types and developmental stages... -
Gage_uORF_allelic_variation_2021
This directory contains genotype datasets used for analysis in the paper "Variation in upstream open reading frames contributes to allelic diversity in maize protein abundance"... -
Genomes To Fields Inbred Ear Imaging 2017
Data types in this directory tree are: dimension and width profile data collected from scanned images of ears, cobs, and kernels collected from the Genomes To Fields (G2F)... -
Genomic variation for 104 rice elite cultivars, landraces and wild relatives
Genomic variation obtained from analysis of high throughput sequencing (HTS) illumina data for 94 varieties of Oryza sativa and 10 wild relatives from O. rufipogon and O.... -
Prediction of evolutionary constraint by genomic annotations improves...
Supporting data for "Prediction of evolutionary constraint by genomic annotations improves prioritization of causal variants in maize"... -
Building a tRNA thermometer to estimate microbial adaptation to temperature
This repository contains the saved computing environments used in the paper "Building a tRNA thermometer to estimate microbial adaptation to temperature." The directory contains... -
Real and simulated maize images for leaf counting study
This image dataset contains 4,633 real and 4,060 simulated maize images. The real images were captured in the greenhouse of the University of Nebraska-Lincoln’s Greenhouse... -
GOMAP Wheat Reference Sequences 1.1
This dataset generated by GOMAP is a high-coverage and reproducible functional annotation set based on Gene Ontology (GO) term assignments that covers all high confidence genes...