Data packages for One Thousand Plant transcriptomes and phylogenomics of green plants

Transcript assemblies, multiple sequence alignments, gene tree and species trees included in analyses described in One Thousand Plant Transcriptomes Initiative publication. Data handling and analyses scripts are also included for gene tree estimation, species tree estimation, genome duplication inference and gene family expansion and contraction inference.

Data and Resources

Additional Info

Field	Value
Author	One Thousand Plant Transcriptomes Initiative, Gane Ka-Shu Wong, James H. Leebens-Mack
Last Updated	June 23, 2024, 17:24 (UTC)
Created	June 23, 2024, 17:24 (UTC)
Citation	One Thousand Plant Transcriptomes Initiative, Gane Ka-Shu Wong, James H. Leebens-Mack 2019. Data packages for One Thousand Plant transcriptomes and phylogenomics of green plants. CyVerse Data Commons. DOI 10.25739/8m7t-4e85
Date created in discovery environment	2019-08-12 02:06:23
Date last modified in discovery environment	2020-02-20 22:05:33
contributor	Ramona L. Walls, Stefan A. Rensing, Ivo Grosse, Kristian K. Ullrich, Siavash Mirarab, Tandy Warnow, Martin Porsch, Zheng Li, Marcel Quint, Matthew A. Gitzendanner, Eric J. Carpenter, Michael S. Barker
geoLocation	global
identifierType	DOI
publisher	CyVerse Data Commons
relatedIdentifier	http://jlmwiki.plantbio.uga.edu/onekp/v2/, https://github.com/smirarab/1kp, https://github.com/GrosseLab/OneKP-gene-family-evo
resourceType	Phylogenomic data including sequences, multiple sequence alignments, gene trees and species trees, and data handling scripts.
reuse_or_citation_conditions	cite https://www.nature.com/articles/s41586-019-1693-2