Barrow Viromes

These are 5 viromes used for investigating the viral community in three kinds of extreme environments: Sea ice, sea ice brine, and cryopeg brine. The liquid samples were initially passed through polycarbonate 0.2-μm-pore-size filters to remove cells and particles with sizes exceeding 0.22 μm. Viruses in the filtrate were concentrated and used for isolating their DNA, which were then sequenced by Illumina HiSeq 2500 platform to generate the metaG reads. The uploaded ‘.gz’ data were quality-controlled reads, which can then be used for assembly to generate viral contigs/genomes, and for further investigation of viral community and diversity.

Data and Resources

This dataset has no data

Additional Info

Field Value
Author Matthew Sullivan, Zhiping Zhong
Last Updated June 24, 2024, 17:01 (UTC)
Created June 24, 2024, 17:01 (UTC)
AlternateIdentifier /b7946/p2pk96
Analysis_tool http://ivirus.us/using-ivirus-tools/
Citation Matthew Sullivan, Zhiping Zhong 2018. Barrow Viromes. CyVerse Data Commons. DOI 10.7946/P2PK96
Date created in discovery environment 2018-06-05 18:33:40
Date last modified in discovery environment 2020-02-20 22:05:33
Description These are 5 viromes used for investigating the viral community in three kinds of extreme environments: Sea ice, sea ice brine, and cryopeg brine. The liquid samples were initially passed through polycarbonate 0.2-μm-pore-size filters to remove cells and particles with sizes exceeding 0.22 μm. Viruses in the filtrate were concentrated and used for isolating their DNA, which were then sequenced by Illumina HiSeq 2500 platform to generate the metaG reads. The uploaded ‘.gz’ data were quality-controlled reads, which can then be used for assembly to generate viral contigs/genomes, and for further investigation of viral community and diversity.
RelatedIdentifier
ResourceType virome sequence data
Rights CC0
Subject Barrow, extreme environments, Virome
alternateIdentifierType ARK
compressed_data true
contributorName Zhiping Zhong
contributorType ContactPerson
creatorAffiliation The Ohio State University
creatorNameIdentifier 0000-0002-4275-0403
datacite.publisher CyVerse Data Commons
datacite.resourcetype Dataset
descriptionType Abstract
external_data_link http://datacommons.cyverse.org/browse/iplant/home/shared/iVirus/Barrow_viromes2018
geoLocationBox
geoLocationPlace Barrow in Alaska
geoLocationPoint 71.2944 -156.7153
identifierType DOI
is_deprecated false
relatedIdentifierType
relationType
reuse_or_citation_conditions