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Reicher_PooledProteinTagging_2020
In our manuscript "Pooled protein tagging, cellular imaging and in situ sequencing for monitoring drug action in real time" we describe a scalable method to characterize effects... -
Ramstein_SNPConstraintPrediction_2022
Supporting data for "Prediction of evolutionary constraint by genomic annotations improves prioritization of causal variants in maize"... -
The relevance of dominance and functional annotations to predict agronomic...
Supporting data for analyses of hybrid panels in “The relevance of dominance and functional annotations to predict agronomic traits in hybrid maize” (bioRxiv:... -
scAGN dataset
This dataset is used for reproducing results from a novel method called scAGN for cell-type identification from an unlabeled transcriptomics dataset given a reference dataset... -
Construction of the third-generation Zea mays haplotype map
An international consortium of maize research groups combined resources to develop the maize haplotype version 3 (HapMap 3), built from whole-genome sequencing data from 1218... -
Impact of Green Infrastructure on Canopy Height
This folder contains models created from lidar to investigate the impact of Green Infrastructure on vegetation growth. The lidar data used is stored within this folder as well... -
Data packages for One Thousand Plant transcriptomes and phylogenomics of green plants
Transcript assemblies, multiple sequence alignments, gene tree and species trees included in analyses described in One Thousand Plant Transcriptomes Initiative publication. Data... -
Brassicaceae_lincRNAs
Files of use for examining lincRNAs in Brassicaceae -
CS18_G2F
RGB and multi-spectral images with generated orthomosaics taken over the Genomes 2 Fields (G2F; https://www.genomes2fields.org/) project in College Station, TX, 2018 season. (CS18) -
Fluctuations of the transcription factor ATML1 generate the pattern of giant...
These files are the primary time lapse imaging data for the paper: Heather M. Meyer, Jose Teles, Pau Formosa-Jordan, Yassin Refahi, Rita San-Bento, Gwyneth Ingram, Henrik... -
McConnell_Coverage_2022
In our manuscript "Immune gene variation associated with chromosome-scale differences among individual zebrafish genomes" we describe immune gene variation among individual... -
MartinezMeyer_et_al_DivDist_2021
Species distribution model input layers for Mexican Wolf (Canis lupus baileyi), in support of publication by Martinez-Meyer et al. (2021) Diversity and Distributions.... -
MaizeCode_annotation_evidence_data_2017
Here we provide a standardized evidence datasets for doing MAKER-P annotation on maize genomes. The data was collected from public repositories like genbank, gramene and... -
Maize Syn10 Binmap markers with traits
In order to safeguard feeding the growing human population, it is important to understand and exploit the genetic basis of quantitative traits. Next-generation sequencing... -
San Joaquin Basin Model - Grace Match
ParFlow-CLM Model of the San Joaquin River Basin. This iteration of the model includes groundwater pumping and irrigation inputs. All datasets (except NLDAS forcing data) are... -
deprecated_Dysregulation of expression correlates with rare-allele burden...
Data in this directory is associated with Kremling et al., 2018, Nature. The data types in this directory tree are the matrix of gene expression counts of an average of 255... -
Dysregulation of expression correlates with rare-allele burden and fitness...
The data under this DOI include gene expression counts from a diversity panel of maize collected from 7 tissues (Goodman-Buckler Diversity panel or '282 panel'). Also contained... -
Stomatal Microtubule Detection Dataset
The dataset is utilized for the application of methods detailed in the paper titled "Segmenting Tubular Structures in Biological Images via Geometry-Aware Stretching Active... -
EquCab3 intermediate assemblies
This repository contains intermediate assemblies created in the process of producing EquCab3, an updated reference genome for the domestic horse. It includes a PacBio only... -
JZhang_LCondon_CONUS_Topography_Sep2020
This is a national topographic dataset that can support physically based hydrologic simulations at 1km and 250m spatial resolution over contiguous United States. A R package...